| TF name | Position | PWM scan score |
| CpxR | 360-374 | 9.179 |
| IHF | 109-121 | 9.143 |
| DnaA | 237-245 | 8.190 |
| RcsB | 164-177 | 8.150 |
| NarL | 5-11 | 8.142 |
| Fis | 343-363 | 7.968 |
| NorR | 244-260 | 7.607 |
| ArgR | 16-31 | 7.494 |
| AraC | 146-163 | 6.884 |
| MetR | 306-329 | 6.844 |
| H-NS | 23-37 | 6.554 |
| AgaR | 353-376 | 6.535 |
| MelR | 316-333 | 6.336 |
| SoxS | 98-115 | 6.295 |
| RhaS | 121-137 | 6.039 |
| IdnR | 15-30 | 6.010 |
| NtrC | 138-154 | 5.955 |
| OmpR | 153-172 | 5.807 |
| FadR | 70-86 | 5.752 |
| NarP | 32-38 | 5.557 |
| MarA | 223-243 | 5.451 |
| Lrp | 199-210 | 5.375 |
| DeoR | 369-384 | 5.211 |
| PspF | 16-32 | 5.189 |
| GalS | 284-299 | 5.186 |
| GalR | 284-299 | 5.186 |
| Rob | 242-262 | 5.018 |
| GadE | 232-251 | 5.007 |
| Ada | 1-28 | 5.001 |