| TF name | Position | PWM scan score |
| UlaR | 170-189 | 13.716 |
| MelR | 225-242 | 12.746 |
| FNR | 152-173 | 10.274 |
| IdnR | 359-374 | 9.836 |
| ModE | 353-379 | 9.762 |
| Lrp | 16-27 | 9.697 |
| IHF | 157-169 | 9.297 |
| TorR | 369-378 | 9.285 |
| CRP | 149-170 | 9.243 |
| MetR | 81-104 | 9.212 |
| Nac | 182-196 | 9.040 |
| AgaR | 159-182 | 8.762 |
| CysB | 69-110 | 8.625 |
| ArgP | 281-293 | 8.262 |
| H-NS | 46-60 | 8.041 |
| Fis | 183-203 | 7.791 |
| RhaS | 101-117 | 7.781 |
| NorR | 279-295 | 7.765 |
| ArcA | 136-196 | 7.762 |
| OmpR | 144-163 | 7.586 |
| CueR | 72-90 | 7.554 |
| CytR | 255-294 | 7.013 |
| NarL | 332-338 | 6.907 |
| PhoB | 115-134 | 6.898 |
| RcsB | 120-133 | 6.475 |
| GlpR | 210-229 | 6.407 |
| Mlc | 176-198 | 6.063 |
| XylR | 327-344 | 5.873 |
| FruR | 362-379 | 5.872 |
| Rob | 211-231 | 5.667 |
| NarP | 197-203 | 5.552 |
| MalT | 344-353 | 5.445 |
| CpxR | 181-195 | 5.209 |
| AraC | 8-25 | 5.086 |