| TF name | Position | PWM scan score |
| GadE | 320-339 | 11.682 |
| TorR | 205-214 | 10.323 |
| FNR | 372-393 | 9.514 |
| Mlc | 186-208 | 9.180 |
| FruR | 76-93 | 8.807 |
| IHF | 324-336 | 8.147 |
| Lrp | 38-49 | 8.094 |
| NtrC | 315-331 | 7.512 |
| Ada | 7-34 | 7.404 |
| DnaA | 187-195 | 7.209 |
| MetJ | 123-130 | 7.190 |
| UxuR | 137-154 | 6.924 |
| NarL | 139-145 | 6.918 |
| FadR | 82-98 | 6.911 |
| AgaR | 265-288 | 6.569 |
| NagC | 188-210 | 6.361 |
| PspF | 199-215 | 6.152 |
| PhoB | 128-147 | 5.844 |
| MetR | 366-389 | 5.744 |
| UlaR | 179-198 | 5.511 |
| Nac | 290-304 | 5.310 |
| SoxS | 358-375 | 5.254 |
| AraC | 33-50 | 5.171 |
| RcsB | 279-292 | 5.161 |
| MarA | 256-276 | 5.062 |