| TF name | Position | PWM scan score |
| ArcA | 90-150 | 12.442 |
| Fur | 152-166 | 11.082 |
| CytR | 126-165 | 10.251 |
| Mlc | 311-333 | 10.192 |
| Ada | 145-172 | 9.932 |
| AgaR | 150-173 | 9.723 |
| Nac | 69-83 | 9.329 |
| NagC | 80-102 | 9.210 |
| FNR | 73-94 | 8.998 |
| OmpR | 71-90 | 8.781 |
| ArgP | 362-374 | 8.509 |
| UlaR | 79-98 | 8.348 |
| IdnR | 63-78 | 8.338 |
| MetR | 22-45 | 8.289 |
| MarA | 303-323 | 8.234 |
| GalS | 25-40 | 7.926 |
| GalR | 25-40 | 7.926 |
| Fis | 356-376 | 7.893 |
| XylR | 60-77 | 7.884 |
| H-NS | 139-153 | 7.876 |
| CysB | 52-93 | 7.834 |
| OxyR | 50-94 | 7.766 |
| PhoP | 111-127 | 7.734 |
| DcuR | 76-130 | 7.676 |
| RcsB | 74-87 | 7.608 |
| IHF | 157-169 | 7.544 |
| CpxR | 112-126 | 7.365 |
| NarL | 72-78 | 7.283 |
| PhoB | 129-148 | 7.256 |
| DeoR | 27-42 | 7.120 |
| DnaA | 88-96 | 7.116 |
| NorR | 66-82 | 6.744 |
| Lrp | 146-157 | 6.632 |
| LacI | 162-182 | 6.554 |
| GadE | 139-158 | 6.553 |
| FadR | 113-129 | 6.550 |
| AraC | 217-234 | 6.467 |
| NarP | 124-130 | 6.076 |
| TyrR | 145-166 | 5.893 |
| PurR | 286-301 | 5.810 |
| UxuR | 106-123 | 5.555 |
| SoxS | 77-94 | 5.335 |