| TF name | Position | PWM scan score |
| SoxS | 247-264 | 11.678 |
| IHF | 228-240 | 9.794 |
| XylR | 119-136 | 9.771 |
| RcsB | 269-282 | 9.355 |
| CysB | 271-312 | 9.189 |
| ArcA | 284-344 | 9.179 |
| H-NS | 383-397 | 9.007 |
| AgaR | 220-243 | 8.950 |
| MarA | 350-370 | 8.603 |
| OmpR | 1-20 | 8.143 |
| NorR | 39-55 | 7.583 |
| DnaA | 59-67 | 7.375 |
| TorR | 60-69 | 7.314 |
| Rob | 219-239 | 7.294 |
| UxuR | 359-376 | 7.247 |
| Mlc | 14-36 | 7.244 |
| NarL | 303-309 | 7.173 |
| Ada | 295-322 | 6.986 |
| FadR | 207-223 | 6.955 |
| ModE | 318-344 | 6.794 |
| ArgP | 224-236 | 6.589 |
| Nac | 237-251 | 6.557 |
| NtrC | 246-262 | 6.449 |
| UlaR | 288-307 | 6.441 |
| PspF | 155-171 | 6.326 |
| Lrp | 85-96 | 6.296 |
| CueR | 120-138 | 6.260 |
| MetR | 207-230 | 6.170 |
| GadE | 208-227 | 6.128 |
| TyrR | 317-338 | 5.976 |
| RhaS | 159-175 | 5.787 |
| Fis | 330-350 | 5.783 |
| GntR | 204-223 | 5.736 |
| GcvA | 304-332 | 5.721 |
| FNR | 219-240 | 5.695 |
| GlpR | 218-237 | 5.565 |
| IdnR | 303-318 | 5.526 |
| AraC | 177-194 | 5.479 |
| PhoP | 215-231 | 5.241 |
| CpxR | 292-306 | 5.207 |