| TF name | Position | PWM scan score |
| Fur | 357-371 | 16.567 |
| GadE | 344-363 | 12.824 |
| GlpR | 245-264 | 11.158 |
| ArcA | 196-256 | 10.864 |
| Nac | 355-369 | 10.498 |
| MelR | 354-371 | 10.166 |
| NagC | 221-243 | 10.149 |
| Mlc | 219-241 | 9.939 |
| UxuR | 201-218 | 9.700 |
| MetR | 202-225 | 9.384 |
| Lrp | 211-222 | 9.216 |
| Fis | 315-335 | 8.814 |
| IHF | 357-369 | 8.783 |
| ArgR | 109-124 | 8.775 |
| DnaA | 163-171 | 8.717 |
| PhoB | 113-132 | 8.693 |
| CpxR | 279-293 | 8.583 |
| Rob | 155-175 | 7.965 |
| UlaR | 208-227 | 7.835 |
| DeoR | 280-295 | 7.562 |
| H-NS | 102-116 | 7.425 |
| TyrR | 205-226 | 7.373 |
| Ada | 196-223 | 7.239 |
| ArgP | 322-334 | 7.040 |
| OxyR | 308-352 | 7.034 |
| RhaS | 61-77 | 6.929 |
| OmpR | 198-217 | 6.047 |
| MarA | 348-368 | 5.945 |
| NtrC | 372-388 | 5.803 |
| CRP | 205-226 | 5.687 |
| ModE | 134-160 | 5.554 |
| PurR | 359-374 | 5.482 |
| XylR | 106-123 | 5.406 |
| RcsB | 335-348 | 5.386 |
| AgaR | 210-233 | 5.378 |
| TorR | 337-346 | 5.375 |
| NarL | 345-351 | 5.366 |
| FNR | 334-355 | 5.145 |