| TF name | Position | PWM scan score |
| PhoB | 283-302 | 11.613 |
| UlaR | 280-299 | 11.254 |
| OmpR | 314-333 | 9.681 |
| AgaR | 317-340 | 9.173 |
| Nac | 318-332 | 9.168 |
| IHF | 310-322 | 9.005 |
| Fis | 296-316 | 8.936 |
| GlpR | 261-280 | 7.884 |
| Lrp | 199-210 | 7.782 |
| RcsB | 197-210 | 7.761 |
| Ada | 307-334 | 7.668 |
| GntR | 290-309 | 7.500 |
| PspF | 158-174 | 7.315 |
| TorR | 190-199 | 6.955 |
| FNR | 320-341 | 6.864 |
| CpxR | 193-207 | 6.731 |
| MelR | 170-187 | 6.729 |
| TyrR | 286-307 | 6.556 |
| H-NS | 22-36 | 6.401 |
| NarL | 154-160 | 6.267 |
| MarA | 229-249 | 6.165 |
| PurR | 263-278 | 6.140 |
| DeoR | 159-174 | 6.118 |
| UxuR | 133-150 | 6.039 |
| XylR | 93-110 | 5.707 |
| ArgP | 367-379 | 5.577 |
| CRP | 4-25 | 5.418 |
| MetJ | 148-155 | 5.408 |
| DnaA | 352-360 | 5.014 |