| TF name | Position | PWM scan score |
| GcvA | 27-55 | 13.566 |
| FNR | 181-202 | 10.945 |
| AgaR | 255-278 | 10.091 |
| PurR | 111-126 | 9.620 |
| PhoB | 270-289 | 9.342 |
| CpxR | 230-244 | 8.910 |
| H-NS | 232-246 | 8.766 |
| MetJ | 230-237 | 8.664 |
| TyrR | 226-247 | 8.631 |
| Nac | 234-248 | 8.249 |
| CysB | 6-47 | 8.163 |
| GadE | 232-251 | 7.944 |
| RcsB | 30-43 | 7.854 |
| GntR | 68-87 | 7.743 |
| Lrp | 241-252 | 7.727 |
| TorR | 209-218 | 7.438 |
| XylR | 143-160 | 7.307 |
| DeoR | 363-378 | 7.138 |
| NtrC | 9-25 | 7.090 |
| MarA | 243-263 | 6.972 |
| DnaA | 314-322 | 6.709 |
| OmpR | 234-253 | 6.679 |
| MelR | 29-46 | 6.659 |
| RhaS | 110-126 | 6.340 |
| ArgP | 195-207 | 6.201 |
| ArcA | 164-224 | 6.017 |
| FhlA | 5-44 | 5.776 |
| AraC | 146-163 | 5.576 |
| NarP | 245-251 | 5.532 |
| MetR | 123-146 | 5.432 |
| NarL | 184-190 | 5.251 |
| GalR | 111-126 | 5.229 |
| GalS | 111-126 | 5.229 |
| LexA | 111-130 | 5.163 |
| IHF | 29-41 | 5.010 |
| UlaR | 360-379 | 5.002 |