| TF name | Position | PWM scan score |
| GlpR | 228-247 | 14.359 |
| H-NS | 236-250 | 13.414 |
| FNR | 223-244 | 13.352 |
| MarA | 13-33 | 10.843 |
| XylR | 382-399 | 10.701 |
| SoxS | 358-375 | 10.497 |
| NorR | 379-395 | 9.548 |
| Nac | 378-392 | 9.327 |
| DnaA | 391-399 | 9.258 |
| MalT | 329-338 | 9.077 |
| NarL | 387-393 | 8.755 |
| Fis | 229-249 | 8.438 |
| CRP | 220-241 | 8.102 |
| IHF | 229-241 | 8.008 |
| GadE | 153-172 | 7.614 |
| RcsB | 137-150 | 7.463 |
| Rob | 232-252 | 7.300 |
| CpxR | 143-157 | 7.126 |
| MelR | 311-328 | 6.763 |
| OxyR | 211-255 | 6.565 |
| ArgP | 304-316 | 6.498 |
| PspF | 371-387 | 6.475 |
| Lrp | 242-253 | 6.226 |
| GalS | 308-323 | 5.939 |
| GalR | 308-323 | 5.939 |
| NarP | 223-229 | 5.698 |
| Fur | 365-379 | 5.656 |
| GntR | 348-367 | 5.577 |
| MetR | 354-377 | 5.557 |
| PurR | 347-362 | 5.423 |
| FadR | 209-225 | 5.387 |
| MetJ | 223-230 | 5.336 |
| PhoB | 365-384 | 5.189 |
| OmpR | 223-242 | 5.114 |
| AraC | 166-183 | 5.062 |
| UxuR | 215-232 | 5.018 |