| TF name | Position | PWM scan score |
| IHF | 175-187 | 10.676 |
| AgaR | 261-284 | 10.328 |
| GcvA | 21-49 | 10.102 |
| DnaA | 270-278 | 10.045 |
| PhoB | 70-89 | 10.024 |
| IdnR | 114-129 | 9.715 |
| NarP | 235-241 | 9.705 |
| SoxS | 254-271 | 9.523 |
| Nac | 89-103 | 9.338 |
| CytR | 70-109 | 9.335 |
| XylR | 305-322 | 8.843 |
| NarL | 389-395 | 8.755 |
| Lrp | 80-91 | 8.545 |
| CRP | 289-310 | 8.433 |
| RcsB | 289-302 | 8.393 |
| TorR | 77-86 | 7.994 |
| NorR | 129-145 | 7.493 |
| Fis | 144-164 | 7.444 |
| NtrC | 100-116 | 7.332 |
| ArcA | 251-311 | 7.303 |
| ArgP | 267-279 | 7.202 |
| NagC | 127-149 | 7.148 |
| CpxR | 234-248 | 7.036 |
| Fur | 19-33 | 6.951 |
| PhoP | 261-277 | 6.702 |
| UxuR | 256-273 | 6.617 |
| MalT | 200-209 | 6.611 |
| GlpR | 291-310 | 6.578 |
| FNR | 138-159 | 6.552 |
| LacI | 367-387 | 6.521 |
| TyrR | 267-288 | 6.309 |
| GadE | 78-97 | 5.801 |
| RhaS | 97-113 | 5.514 |
| FhlA | 309-348 | 5.498 |
| ModE | 73-99 | 5.411 |
| OxyR | 246-290 | 5.409 |
| MetJ | 117-124 | 5.218 |
| FruR | 292-309 | 5.184 |
| OmpR | 272-291 | 5.062 |
| AraC | 283-300 | 5.003 |