| TF name | Position | PWM scan score |
| MarA | 71-91 | 12.868 |
| ArcA | 335-395 | 10.616 |
| OmpR | 298-317 | 10.487 |
| ModE | 357-383 | 9.684 |
| Fis | 127-147 | 8.754 |
| H-NS | 334-348 | 8.724 |
| SoxS | 73-90 | 8.522 |
| CytR | 309-348 | 8.456 |
| CRP | 348-369 | 8.391 |
| NarL | 118-124 | 8.353 |
| PhoB | 128-147 | 8.128 |
| Lrp | 230-241 | 7.948 |
| Nac | 332-346 | 7.636 |
| MelR | 346-363 | 7.139 |
| GlpR | 214-233 | 7.056 |
| AgaR | 349-372 | 6.853 |
| AraC | 340-357 | 6.838 |
| CueR | 258-276 | 6.656 |
| TyrR | 358-379 | 6.441 |
| ArgP | 311-323 | 6.129 |
| MetJ | 147-154 | 5.910 |
| GalS | 278-293 | 5.736 |
| GalR | 278-293 | 5.736 |
| RhaS | 267-283 | 5.519 |
| FNR | 334-355 | 5.448 |
| UlaR | 354-373 | 5.280 |
| DeoR | 280-295 | 5.160 |
| UxuR | 275-292 | 5.078 |
| TorR | 361-370 | 5.031 |
| IHF | 307-319 | 5.019 |
| GadE | 311-330 | 5.013 |