| TF name | Position | PWM scan score |
| CRP | 17-38 | 14.998 |
| ArcA | 274-334 | 13.716 |
| MetR | 276-299 | 12.930 |
| TorR | 183-192 | 11.877 |
| PhoB | 298-317 | 11.862 |
| NagC | 313-335 | 10.879 |
| SoxS | 5-22 | 10.592 |
| Mlc | 333-355 | 10.111 |
| RcsB | 284-297 | 9.870 |
| H-NS | 231-245 | 9.469 |
| IHF | 286-298 | 9.300 |
| DnaA | 27-35 | 9.258 |
| RhaS | 358-374 | 9.148 |
| FruR | 64-81 | 8.885 |
| XylR | 18-35 | 8.870 |
| Lrp | 283-294 | 8.458 |
| FNR | 20-41 | 8.325 |
| TyrR | 324-345 | 7.885 |
| Fis | 115-135 | 7.806 |
| GcvA | 260-288 | 7.602 |
| FhlA | 53-92 | 7.530 |
| PurR | 327-342 | 7.507 |
| ModE | 341-367 | 7.427 |
| OmpR | 137-156 | 7.375 |
| NarL | 120-126 | 6.907 |
| AraC | 278-295 | 6.894 |
| GadE | 91-110 | 6.426 |
| CpxR | 147-161 | 6.402 |
| Nac | 84-98 | 6.389 |
| GlpR | 316-335 | 6.235 |
| PhoP | 156-172 | 6.231 |
| MetJ | 214-221 | 6.013 |
| CysB | 314-355 | 5.862 |
| AgaR | 236-259 | 5.856 |
| PspF | 265-281 | 5.809 |
| Ada | 214-241 | 5.675 |
| GntR | 147-166 | 5.609 |
| GalS | 327-342 | 5.589 |
| GalR | 327-342 | 5.589 |
| FadR | 174-190 | 5.527 |
| MalT | 183-192 | 5.521 |
| Rob | 328-348 | 5.258 |
| CytR | 27-66 | 5.243 |
| Fur | 278-292 | 5.073 |