| TF name | Position | PWM scan score |
| NarP | 198-204 | 10.661 |
| ModE | 251-277 | 9.642 |
| TyrR | 275-296 | 9.551 |
| ArcA | 258-318 | 9.231 |
| H-NS | 343-357 | 8.504 |
| NtrC | 61-77 | 8.294 |
| PurR | 263-278 | 7.309 |
| LacI | 234-254 | 7.228 |
| PhoB | 324-343 | 7.220 |
| RcsB | 344-357 | 6.922 |
| GlpR | 294-313 | 6.835 |
| MalT | 20-29 | 6.790 |
| Rob | 290-310 | 6.578 |
| Fis | 337-357 | 6.572 |
| NarL | 91-97 | 6.560 |
| OmpR | 205-224 | 6.180 |
| CRP | 312-333 | 6.166 |
| IHF | 276-288 | 6.004 |
| XylR | 276-293 | 5.788 |
| CpxR | 342-356 | 5.677 |
| Lrp | 344-355 | 5.514 |
| MetJ | 306-313 | 5.398 |
| GadE | 280-299 | 5.348 |
| RhaS | 141-157 | 5.314 |
| CueR | 18-36 | 5.147 |
| FhlA | 204-243 | 5.147 |
| UxuR | 337-354 | 5.113 |