| TF name | Position | PWM scan score |
| GadE | 309-328 | 11.457 |
| Rob | 325-345 | 11.254 |
| PhoP | 266-282 | 10.902 |
| MarA | 69-89 | 10.338 |
| FadR | 243-259 | 9.303 |
| UxuR | 245-262 | 9.132 |
| CpxR | 226-240 | 8.756 |
| Lrp | 223-234 | 8.385 |
| Nac | 45-59 | 8.163 |
| AraC | 208-225 | 7.904 |
| PhoB | 1-20 | 7.424 |
| CueR | 3-21 | 7.318 |
| PspF | 211-227 | 7.315 |
| RcsB | 273-286 | 7.238 |
| Fis | 53-73 | 7.148 |
| IHF | 103-115 | 7.107 |
| ArgP | 79-91 | 7.046 |
| TorR | 247-256 | 6.971 |
| NarL | 15-21 | 6.944 |
| GntR | 14-33 | 6.846 |
| H-NS | 275-289 | 6.825 |
| NarP | 302-308 | 6.703 |
| LacI | 213-233 | 6.554 |
| MalT | 179-188 | 6.360 |
| SoxS | 71-88 | 5.425 |
| AgaR | 200-223 | 5.416 |
| FNR | 309-330 | 5.390 |
| MetR | 147-170 | 5.051 |
| IdnR | 48-63 | 5.033 |