| TF name | Position | PWM scan score |
| H-NS | 321-335 | 12.879 |
| AraC | 202-219 | 11.876 |
| IdnR | 275-290 | 11.544 |
| CytR | 171-210 | 11.374 |
| SoxS | 159-176 | 11.141 |
| ModE | 294-320 | 9.820 |
| CRP | 141-162 | 9.475 |
| RcsB | 116-129 | 9.241 |
| AgaR | 304-327 | 9.003 |
| Rob | 291-311 | 8.794 |
| Fis | 210-230 | 8.759 |
| PhoP | 151-167 | 8.482 |
| PhoB | 322-341 | 8.387 |
| GntR | 280-299 | 8.092 |
| FNR | 144-165 | 8.075 |
| NarL | 270-276 | 8.006 |
| XylR | 251-268 | 7.838 |
| Fur | 326-340 | 7.701 |
| IHF | 188-200 | 7.613 |
| RhaS | 286-302 | 7.586 |
| GadE | 197-216 | 7.478 |
| FruR | 198-215 | 7.324 |
| Lrp | 204-215 | 7.116 |
| TorR | 152-161 | 6.971 |
| PurR | 277-292 | 6.674 |
| OmpR | 321-340 | 6.563 |
| Mlc | 376-398 | 6.497 |
| GcvA | 326-354 | 6.301 |
| MarA | 270-290 | 6.281 |
| ArcA | 99-159 | 6.251 |
| NarP | 377-383 | 6.076 |
| CueR | 316-334 | 5.818 |
| NorR | 143-159 | 5.801 |
| DnaA | 222-230 | 5.662 |
| GlpR | 284-303 | 5.603 |
| ArgP | 330-342 | 5.599 |
| Nac | 142-156 | 5.449 |
| PspF | 137-153 | 5.349 |
| CysB | 255-296 | 5.263 |
| GalR | 97-112 | 5.202 |
| GalS | 97-112 | 5.202 |
| MetR | 219-242 | 5.075 |
| TrpR | 273-290 | 5.058 |