| TF name | Position | PWM scan score |
| Ada | 132-159 | 16.876 |
| Nac | 247-261 | 13.910 |
| Fur | 375-389 | 12.158 |
| FNR | 255-276 | 11.893 |
| OmpR | 242-261 | 11.516 |
| MetR | 247-270 | 10.838 |
| H-NS | 242-256 | 10.791 |
| AgaR | 242-265 | 10.367 |
| ModE | 346-372 | 9.981 |
| XylR | 251-268 | 9.481 |
| RcsB | 369-382 | 9.393 |
| UlaR | 12-31 | 8.803 |
| GcvA | 91-119 | 8.717 |
| MetJ | 347-354 | 8.626 |
| DnaA | 82-90 | 8.546 |
| IHF | 249-261 | 8.521 |
| IdnR | 381-396 | 8.330 |
| ArcA | 218-278 | 8.292 |
| Lrp | 258-269 | 8.218 |
| MelR | 112-129 | 7.925 |
| TorR | 248-257 | 7.699 |
| TrpR | 379-396 | 7.632 |
| OxyR | 241-285 | 7.546 |
| NagC | 246-268 | 7.481 |
| NarL | 358-364 | 7.173 |
| DeoR | 143-158 | 6.904 |
| AraC | 95-112 | 6.618 |
| SoxS | 226-243 | 6.412 |
| GadE | 242-261 | 6.390 |
| NorR | 248-264 | 6.199 |
| MalT | 149-158 | 6.038 |
| ArgR | 12-27 | 5.948 |
| NarP | 318-324 | 5.875 |
| TyrR | 325-346 | 5.447 |
| CRP | 363-384 | 5.382 |
| FadR | 17-33 | 5.345 |
| CpxR | 121-135 | 5.327 |
| PspF | 255-271 | 5.131 |
| Fis | 198-218 | 5.036 |