| TF name | Position | PWM scan score |
| MarA | 65-85 | 13.350 |
| FadR | 79-95 | 11.929 |
| RcsB | 78-91 | 10.256 |
| ArgP | 46-58 | 10.173 |
| CRP | 41-62 | 10.097 |
| Rob | 147-167 | 8.935 |
| H-NS | 51-65 | 8.557 |
| DeoR | 34-49 | 7.780 |
| GlpR | 43-62 | 7.712 |
| SoxS | 46-63 | 7.552 |
| Lrp | 2-13 | 7.337 |
| Fis | 33-53 | 7.307 |
| AgaR | 21-44 | 7.170 |
| FruR | 124-141 | 7.114 |
| NorR | 149-165 | 7.095 |
| IdnR | 31-46 | 6.945 |
| FNR | 44-65 | 6.477 |
| ArgR | 32-47 | 6.284 |
| GadE | 7-26 | 6.275 |
| GalR | 166-181 | 5.971 |
| GalS | 166-181 | 5.971 |
| GcvA | 209-237 | 5.853 |
| PhoB | 225-244 | 5.561 |
| RhaS | 134-150 | 5.557 |
| ArcA | 149-209 | 5.499 |
| PhoP | 37-53 | 5.422 |
| NarL | 129-135 | 5.366 |