| TF name | Position | PWM scan score |
| GcvA | 215-243 | 13.864 |
| ArcA | 287-347 | 13.239 |
| Nac | 272-286 | 10.442 |
| Ada | 45-72 | 10.241 |
| Rob | 279-299 | 9.891 |
| TyrR | 312-333 | 9.466 |
| TorR | 307-316 | 9.317 |
| PspF | 209-225 | 9.019 |
| NarP | 349-355 | 8.911 |
| UlaR | 306-325 | 8.323 |
| AgaR | 48-71 | 7.837 |
| LexA | 165-184 | 7.681 |
| RcsB | 210-223 | 7.644 |
| FruR | 3-20 | 7.332 |
| H-NS | 221-235 | 7.253 |
| ArgP | 309-321 | 7.202 |
| CpxR | 204-218 | 7.161 |
| FNR | 222-243 | 7.140 |
| DnaA | 320-328 | 7.126 |
| PhoB | 252-271 | 7.077 |
| XylR | 289-306 | 6.986 |
| FadR | 35-51 | 6.830 |
| AraC | 322-339 | 6.750 |
| CRP | 154-175 | 6.538 |
| IHF | 310-322 | 6.292 |
| NtrC | 188-204 | 6.226 |
| Fis | 214-234 | 5.845 |
| ArgR | 198-213 | 5.756 |
| NarL | 68-74 | 5.568 |
| MalT | 135-144 | 5.391 |
| Lrp | 75-86 | 5.317 |
| CueR | 91-109 | 5.105 |