| TF name | Position | PWM scan score |
| ArgP | 111-123 | 10.267 |
| PhoB | 103-122 | 10.022 |
| GlpR | 169-188 | 9.374 |
| DnaA | 375-383 | 8.576 |
| UlaR | 219-238 | 8.569 |
| PurR | 22-37 | 8.565 |
| PspF | 16-32 | 8.522 |
| H-NS | 270-284 | 8.345 |
| IHF | 26-38 | 8.168 |
| RhaS | 144-160 | 8.066 |
| MetR | 15-38 | 7.938 |
| CpxR | 22-36 | 7.786 |
| MarA | 103-123 | 7.636 |
| Fis | 102-122 | 7.406 |
| AraC | 204-221 | 7.175 |
| MetJ | 132-139 | 7.065 |
| NarP | 34-40 | 6.524 |
| IdnR | 220-235 | 6.412 |
| FNR | 35-56 | 6.306 |
| CRP | 167-188 | 6.223 |
| Lrp | 110-121 | 6.206 |
| Nac | 30-44 | 5.907 |
| MalT | 364-373 | 5.740 |
| SoxS | 317-334 | 5.645 |
| TorR | 363-372 | 5.493 |
| NarL | 205-211 | 5.366 |