| TF name | Position | PWM scan score |
| GntR | 374-393 | 10.939 |
| NarP | 325-331 | 10.661 |
| ArgP | 381-393 | 10.338 |
| OmpR | 367-386 | 10.216 |
| SoxS | 355-372 | 9.801 |
| CytR | 345-384 | 8.782 |
| FadR | 78-94 | 8.767 |
| XylR | 365-382 | 8.094 |
| H-NS | 370-384 | 7.722 |
| ModE | 233-259 | 7.701 |
| MarA | 375-395 | 7.490 |
| Rob | 373-393 | 7.304 |
| FruR | 124-141 | 7.040 |
| RcsB | 54-67 | 6.809 |
| CRP | 374-395 | 6.691 |
| Ada | 38-65 | 6.642 |
| GlpR | 245-264 | 6.618 |
| IdnR | 291-306 | 6.325 |
| FNR | 353-374 | 6.317 |
| DeoR | 356-371 | 6.143 |
| NarL | 241-247 | 6.105 |
| IHF | 344-356 | 5.884 |
| GadE | 369-388 | 5.727 |
| Mlc | 349-371 | 5.695 |
| Lrp | 376-387 | 5.515 |
| UlaR | 231-250 | 5.505 |
| MelR | 233-250 | 5.499 |
| MalT | 41-50 | 5.156 |
| ArcA | 331-391 | 5.074 |