| TF name | Position | PWM scan score |
| LacI | 78-98 | 11.682 |
| DeoR | 319-334 | 10.825 |
| Ada | 299-326 | 10.386 |
| H-NS | 314-328 | 10.003 |
| MelR | 326-343 | 9.848 |
| UlaR | 357-376 | 9.240 |
| CueR | 167-185 | 9.126 |
| OmpR | 314-333 | 9.075 |
| Lrp | 250-261 | 8.922 |
| XylR | 110-127 | 8.672 |
| GadE | 321-340 | 8.640 |
| AraC | 360-377 | 8.414 |
| Rob | 312-332 | 8.276 |
| NarL | 373-379 | 8.142 |
| Fis | 291-311 | 7.757 |
| GcvA | 308-336 | 7.695 |
| MetJ | 57-64 | 7.612 |
| FNR | 320-341 | 7.264 |
| CRP | 317-338 | 7.109 |
| Nac | 289-303 | 7.074 |
| PhoP | 324-340 | 7.000 |
| MalT | 379-388 | 6.870 |
| SoxS | 265-282 | 6.700 |
| TorR | 274-283 | 6.665 |
| FadR | 143-159 | 6.555 |
| RcsB | 191-204 | 6.399 |
| ArgP | 254-266 | 6.203 |
| IHF | 326-338 | 5.871 |
| ArcA | 296-356 | 5.430 |
| CpxR | 371-385 | 5.126 |
| GlpR | 252-271 | 5.006 |