| TF name | Position | PWM scan score |
| Ada | 63-90 | 16.541 |
| OmpR | 43-62 | 13.596 |
| AgaR | 335-358 | 13.127 |
| CRP | 196-217 | 12.192 |
| PurR | 52-67 | 11.929 |
| MetR | 332-355 | 11.298 |
| IHF | 101-113 | 10.960 |
| Mlc | 84-106 | 10.456 |
| CpxR | 210-224 | 10.415 |
| Fur | 199-213 | 10.381 |
| RcsB | 144-157 | 9.804 |
| LexA | 200-219 | 9.625 |
| FNR | 251-272 | 9.173 |
| H-NS | 33-47 | 8.709 |
| NorR | 330-346 | 8.650 |
| DnaA | 1-9 | 8.639 |
| MalT | 66-75 | 8.485 |
| Lrp | 215-226 | 8.050 |
| AraC | 141-158 | 7.985 |
| Nac | 35-49 | 7.850 |
| GalS | 275-290 | 7.745 |
| GalR | 275-290 | 7.745 |
| SoxS | 93-110 | 7.611 |
| DeoR | 338-353 | 7.562 |
| FhlA | 27-66 | 7.305 |
| ArcA | 83-143 | 7.229 |
| IdnR | 139-154 | 7.177 |
| PhoB | 297-316 | 6.918 |
| PspF | 360-376 | 6.913 |
| TorR | 33-42 | 6.665 |
| PhoP | 192-208 | 6.379 |
| NarL | 130-136 | 6.294 |
| Fis | 3-23 | 6.246 |
| NarP | 349-355 | 6.076 |
| GadE | 330-349 | 5.883 |
| TyrR | 192-213 | 5.878 |
| ArgR | 206-221 | 5.736 |
| UlaR | 194-213 | 5.535 |
| LacI | 122-142 | 5.177 |
| XylR | 207-224 | 5.143 |
| MarA | 308-328 | 5.052 |
| GlpR | 58-77 | 5.015 |