| TF name | Position | PWM scan score |
| GadE | 335-354 | 11.849 |
| AgaR | 60-83 | 11.030 |
| Nac | 332-346 | 10.748 |
| MetJ | 358-365 | 10.091 |
| GntR | 103-122 | 9.989 |
| OmpR | 379-398 | 9.946 |
| MarA | 121-141 | 9.924 |
| IHF | 97-109 | 9.835 |
| Rob | 377-397 | 9.665 |
| MelR | 96-113 | 9.650 |
| PurR | 294-309 | 9.537 |
| LacI | 121-141 | 9.247 |
| Fis | 371-391 | 8.911 |
| UxuR | 120-137 | 8.846 |
| ArgP | 339-351 | 8.813 |
| UlaR | 4-23 | 8.424 |
| AraC | 1-18 | 8.012 |
| XylR | 230-247 | 8.003 |
| NtrC | 114-130 | 7.838 |
| H-NS | 380-394 | 7.713 |
| CRP | 120-141 | 7.411 |
| NagC | 301-323 | 7.372 |
| IdnR | 372-387 | 7.268 |
| CytR | 71-110 | 7.243 |
| MalT | 198-207 | 7.005 |
| TyrR | 292-313 | 6.913 |
| PhoB | 380-399 | 6.873 |
| NarL | 277-283 | 6.723 |
| Ada | 55-82 | 6.672 |
| NarP | 236-242 | 6.524 |
| RcsB | 7-20 | 6.277 |
| ArcA | 35-95 | 6.074 |
| CpxR | 346-360 | 6.056 |
| Lrp | 32-43 | 6.006 |
| GlpR | 122-141 | 5.993 |
| FadR | 136-152 | 5.710 |
| TorR | 207-216 | 5.463 |
| GalS | 122-137 | 5.446 |
| GalR | 122-137 | 5.446 |
| FhlA | 237-276 | 5.357 |
| Mlc | 16-38 | 5.351 |
| MetR | 335-358 | 5.189 |