| TF name | Position | PWM scan score |
| SoxS | 256-273 | 13.437 |
| RcsB | 271-284 | 13.411 |
| CysB | 256-297 | 11.592 |
| Fis | 327-347 | 9.322 |
| CueR | 253-271 | 9.159 |
| UlaR | 87-106 | 8.997 |
| NarP | 303-309 | 8.308 |
| CpxR | 338-352 | 7.968 |
| OmpR | 260-279 | 7.287 |
| MalT | 300-309 | 6.638 |
| ModE | 84-110 | 6.413 |
| DeoR | 14-29 | 6.349 |
| FruR | 267-284 | 6.270 |
| IdnR | 90-105 | 6.267 |
| Fur | 327-341 | 6.254 |
| XylR | 267-284 | 6.167 |
| TorR | 13-22 | 6.115 |
| DnaA | 22-30 | 6.047 |
| NtrC | 60-76 | 6.031 |
| Lrp | 273-284 | 6.027 |
| IHF | 338-350 | 5.776 |
| FadR | 44-60 | 5.562 |
| RhaS | 327-343 | 5.516 |
| MetJ | 95-102 | 5.500 |
| FhlA | 312-351 | 5.417 |
| H-NS | 282-296 | 5.374 |
| LexA | 68-87 | 5.221 |
| FNR | 327-348 | 5.184 |