| TF name | Position | PWM scan score |
| ArcA | 299-359 | 19.655 |
| NagC | 117-139 | 14.264 |
| PhoP | 206-222 | 12.986 |
| Mlc | 115-137 | 11.959 |
| SoxS | 184-201 | 11.941 |
| Nac | 377-391 | 11.478 |
| IdnR | 4-19 | 11.453 |
| OmpR | 112-131 | 11.280 |
| H-NS | 341-355 | 11.040 |
| XylR | 275-292 | 10.616 |
| CysB | 192-233 | 10.300 |
| CytR | 113-152 | 10.094 |
| Rob | 318-338 | 9.423 |
| PspF | 197-213 | 9.142 |
| GadE | 113-132 | 9.129 |
| IHF | 134-146 | 9.052 |
| ArgR | 185-200 | 8.685 |
| DnaA | 284-292 | 8.670 |
| Fis | 153-173 | 8.642 |
| PhoB | 189-208 | 8.467 |
| Lrp | 173-184 | 8.421 |
| DeoR | 294-309 | 8.320 |
| ModE | 125-151 | 7.854 |
| GalR | 148-163 | 7.785 |
| GalS | 148-163 | 7.785 |
| MetR | 85-108 | 7.756 |
| GcvA | 109-137 | 7.416 |
| MetJ | 84-91 | 7.363 |
| UlaR | 54-73 | 7.362 |
| CRP | 303-324 | 6.952 |
| RcsB | 111-124 | 6.907 |
| UxuR | 279-296 | 6.758 |
| TorR | 218-227 | 6.665 |
| FadR | 209-225 | 6.640 |
| ArgP | 204-216 | 6.604 |
| CpxR | 211-225 | 6.481 |
| CaiF | 77-121 | 6.416 |
| MelR | 71-88 | 6.244 |
| NarL | 300-306 | 6.105 |
| MarA | 289-309 | 5.418 |
| FNR | 341-362 | 5.403 |