| TF name | Position | PWM scan score |
| SoxS | 126-143 | 13.212 |
| FadR | 245-261 | 11.772 |
| DnaA | 299-307 | 11.125 |
| H-NS | 119-133 | 10.541 |
| UlaR | 297-316 | 9.423 |
| TorR | 175-184 | 8.822 |
| XylR | 290-307 | 8.373 |
| AraC | 349-366 | 8.329 |
| DeoR | 314-329 | 8.266 |
| MarA | 124-144 | 8.191 |
| IdnR | 45-60 | 8.164 |
| Lrp | 178-189 | 7.836 |
| MalT | 202-211 | 6.699 |
| IHF | 255-267 | 6.695 |
| ArgP | 215-227 | 6.502 |
| Rob | 366-386 | 6.399 |
| MetJ | 307-314 | 6.216 |
| RhaS | 18-34 | 6.012 |
| FruR | 290-307 | 5.841 |
| PhoP | 66-82 | 5.721 |
| Fis | 256-276 | 5.649 |
| Ada | 84-111 | 5.578 |
| Nac | 293-307 | 5.224 |
| LexA | 73-92 | 5.176 |