| TF name | Position | PWM scan score |
| NorR | 248-264 | 12.352 |
| TyrR | 245-266 | 12.114 |
| RhaS | 255-271 | 10.524 |
| H-NS | 334-348 | 10.312 |
| CpxR | 117-131 | 10.024 |
| TorR | 116-125 | 9.298 |
| MarA | 195-215 | 8.972 |
| OmpR | 380-399 | 8.970 |
| AgaR | 344-367 | 8.751 |
| NagC | 368-390 | 8.291 |
| MalT | 101-110 | 8.125 |
| ArgP | 250-262 | 7.967 |
| IHF | 380-392 | 7.712 |
| CRP | 252-273 | 7.684 |
| PhoB | 245-264 | 7.564 |
| MetJ | 255-262 | 7.363 |
| DnaA | 41-49 | 7.204 |
| FruR | 58-75 | 6.942 |
| NarL | 363-369 | 6.880 |
| NtrC | 341-357 | 6.775 |
| Lrp | 79-90 | 6.347 |
| FNR | 8-29 | 6.346 |
| Fis | 162-182 | 6.189 |
| ArgR | 343-358 | 6.069 |
| Mlc | 254-276 | 6.069 |
| ArcA | 320-380 | 5.890 |
| LacI | 40-60 | 5.855 |
| Ada | 272-299 | 5.530 |
| GntR | 147-166 | 5.225 |
| NarP | 30-36 | 5.073 |