| TF name | Position | PWM scan score |
| ModE | 150-176 | 11.885 |
| GntR | 21-40 | 9.037 |
| AgaR | 189-212 | 8.593 |
| MalT | 290-299 | 8.585 |
| Lrp | 80-91 | 7.743 |
| SoxS | 112-129 | 7.619 |
| DnaA | 85-93 | 7.424 |
| AraC | 219-236 | 7.131 |
| MetJ | 175-182 | 6.954 |
| NarL | 1-7 | 6.678 |
| RcsB | 34-47 | 6.536 |
| Fis | 51-71 | 6.429 |
| TyrR | 28-49 | 6.344 |
| FNR | 155-176 | 5.921 |
| PurR | 1-16 | 5.820 |
| Rob | 77-97 | 5.736 |
| Nac | 115-129 | 5.439 |
| MarA | 110-130 | 5.192 |
| XylR | 310-327 | 5.183 |
| IHF | 386-398 | 5.027 |
| IdnR | 194-209 | 5.025 |