| TF name | Position | PWM scan score |
| RcsB | 289-302 | 13.411 |
| CytR | 302-341 | 12.750 |
| ArcA | 200-260 | 12.716 |
| ModE | 260-286 | 12.605 |
| UlaR | 234-253 | 12.487 |
| OmpR | 189-208 | 12.337 |
| Mlc | 240-262 | 12.009 |
| GcvA | 25-53 | 11.770 |
| MelR | 82-99 | 11.686 |
| GntR | 241-260 | 10.920 |
| AraC | 235-252 | 10.797 |
| DcuR | 294-348 | 10.015 |
| UxuR | 231-248 | 10.001 |
| H-NS | 228-242 | 9.773 |
| PhoB | 259-278 | 9.721 |
| PurR | 208-223 | 9.636 |
| AgaR | 209-232 | 9.519 |
| OxyR | 335-379 | 9.403 |
| MetR | 197-220 | 9.315 |
| IHF | 238-250 | 9.254 |
| Nac | 163-177 | 8.997 |
| NagC | 323-345 | 8.880 |
| Fis | 122-142 | 8.764 |
| CRP | 241-262 | 8.708 |
| Rob | 125-145 | 8.672 |
| TorR | 351-360 | 8.515 |
| XylR | 313-330 | 8.129 |
| Lrp | 268-279 | 8.128 |
| NorR | 84-100 | 8.117 |
| GadE | 319-338 | 8.094 |
| NarL | 232-238 | 7.713 |
| ArgP | 132-144 | 7.053 |
| CpxR | 83-97 | 7.038 |
| DeoR | 177-192 | 6.946 |
| FNR | 197-218 | 6.898 |
| CysB | 83-124 | 6.877 |
| PspF | 311-327 | 6.508 |
| MetJ | 171-178 | 6.318 |
| ArgR | 205-220 | 6.138 |
| NarP | 32-38 | 6.076 |
| TyrR | 26-47 | 5.794 |
| DnaA | 248-256 | 5.710 |
| FruR | 203-220 | 5.677 |
| Fur | 311-325 | 5.633 |
| MarA | 72-92 | 5.286 |
| RhaS | 346-362 | 5.124 |
| SoxS | 116-133 | 5.093 |