| TF name | Position | PWM scan score |
| ArgR | 219-234 | 9.505 |
| NorR | 323-339 | 9.457 |
| FNR | 207-228 | 9.074 |
| TorR | 210-219 | 9.065 |
| AraC | 13-30 | 9.006 |
| DnaA | 375-383 | 8.967 |
| Fis | 292-312 | 8.349 |
| H-NS | 255-269 | 7.955 |
| CpxR | 223-237 | 7.855 |
| Lrp | 81-92 | 7.754 |
| MetJ | 148-155 | 7.644 |
| CysB | 193-234 | 7.545 |
| MarA | 183-203 | 7.356 |
| NarP | 64-70 | 7.352 |
| CytR | 276-315 | 7.050 |
| GalS | 184-199 | 7.040 |
| GalR | 184-199 | 7.040 |
| NarL | 69-75 | 6.918 |
| GadE | 213-232 | 6.771 |
| Nac | 166-180 | 6.723 |
| PspF | 161-177 | 6.118 |
| PhoP | 212-228 | 6.031 |
| IHF | 174-186 | 5.857 |
| MetR | 337-360 | 5.773 |
| RcsB | 106-119 | 5.471 |
| NagC | 210-232 | 5.415 |
| ArgP | 272-284 | 5.280 |
| ModE | 64-90 | 5.275 |
| GlpR | 282-301 | 5.268 |
| MalT | 91-100 | 5.236 |