| TF name | Position | PWM scan score |
| RcsB | 297-310 | 10.313 |
| H-NS | 239-253 | 9.599 |
| IHF | 364-376 | 9.221 |
| AraC | 23-40 | 9.006 |
| FNR | 226-247 | 8.361 |
| NagC | 226-248 | 8.129 |
| Lrp | 91-102 | 7.754 |
| MetJ | 158-165 | 7.644 |
| Nac | 333-347 | 7.627 |
| GntR | 272-291 | 7.592 |
| NarL | 266-272 | 7.577 |
| Fis | 292-312 | 7.238 |
| NarP | 86-92 | 7.232 |
| MalT | 210-219 | 7.219 |
| MelR | 328-345 | 6.483 |
| MetR | 318-341 | 6.375 |
| CytR | 265-304 | 6.187 |
| Fur | 280-294 | 5.983 |
| TyrR | 220-241 | 5.971 |
| GlpR | 255-274 | 5.554 |
| SoxS | 175-192 | 5.545 |
| CRP | 304-325 | 5.423 |
| NtrC | 235-251 | 5.363 |
| RhaS | 314-330 | 5.182 |