| TF name | Position | PWM scan score |
| OxyR | 312-356 | 12.196 |
| IHF | 163-175 | 11.515 |
| TorR | 26-35 | 11.128 |
| MelR | 160-177 | 10.611 |
| NorR | 356-372 | 10.400 |
| FNR | 27-48 | 10.350 |
| AgaR | 185-208 | 9.922 |
| H-NS | 337-351 | 9.899 |
| Mlc | 197-219 | 9.831 |
| Rob | 341-361 | 9.495 |
| OmpR | 324-343 | 9.470 |
| Nac | 204-218 | 9.264 |
| Fur | 182-196 | 8.824 |
| PurR | 269-284 | 8.617 |
| ArgP | 180-192 | 7.883 |
| AraC | 212-229 | 7.844 |
| FruR | 270-287 | 7.656 |
| NarL | 375-381 | 7.577 |
| ModE | 367-393 | 7.300 |
| PhoB | 206-225 | 7.014 |
| Lrp | 200-211 | 6.978 |
| MetJ | 301-308 | 6.954 |
| MetR | 173-196 | 6.904 |
| ArcA | 179-239 | 6.861 |
| NarP | 335-341 | 6.629 |
| NagC | 361-383 | 6.455 |
| GlpR | 331-350 | 6.419 |
| CysB | 198-239 | 6.373 |
| XylR | 331-348 | 6.262 |
| Ada | 311-338 | 5.885 |
| RcsB | 373-386 | 5.808 |
| UlaR | 211-230 | 5.758 |
| MalT | 270-279 | 5.403 |
| GadE | 341-360 | 5.326 |