| TF name | Position | PWM scan score |
| Nac | 42-56 | 10.688 |
| PhoB | 34-53 | 10.274 |
| TrpR | 188-205 | 10.185 |
| MarA | 159-179 | 9.516 |
| PurR | 162-177 | 9.009 |
| GalS | 162-177 | 8.831 |
| GalR | 162-177 | 8.831 |
| RcsB | 44-57 | 8.598 |
| CpxR | 143-157 | 8.558 |
| NarL | 202-208 | 8.190 |
| NarP | 220-226 | 7.885 |
| RhaS | 287-303 | 7.743 |
| FNR | 127-148 | 6.870 |
| NtrC | 227-243 | 6.391 |
| Ada | 228-255 | 6.345 |
| ArgP | 9-21 | 6.116 |
| Lrp | 3-14 | 6.035 |
| AraC | 44-61 | 5.921 |
| MalT | 187-196 | 5.912 |
| GntR | 278-297 | 5.864 |
| IHF | 117-129 | 5.675 |
| SoxS | 161-178 | 5.477 |
| CRP | 158-179 | 5.350 |
| TorR | 35-44 | 5.335 |
| MelR | 86-103 | 5.170 |
| DeoR | 196-211 | 5.127 |
| DnaA | 9-17 | 5.046 |