| TF name | Position | PWM scan score |
| CpxR | 196-210 | 9.131 |
| RhaS | 105-121 | 9.070 |
| XylR | 329-346 | 8.638 |
| IHF | 276-288 | 8.277 |
| PhoB | 191-210 | 8.175 |
| H-NS | 362-376 | 8.092 |
| Lrp | 250-261 | 8.011 |
| RcsB | 212-225 | 7.889 |
| GadE | 335-354 | 7.888 |
| FNR | 333-354 | 7.781 |
| MarA | 290-310 | 7.529 |
| IdnR | 207-222 | 7.478 |
| DnaA | 338-346 | 7.375 |
| TorR | 339-348 | 7.293 |
| CRP | 322-343 | 7.217 |
| SoxS | 220-237 | 6.583 |
| NarP | 40-46 | 6.558 |
| Mlc | 332-354 | 6.314 |
| AraC | 340-357 | 6.299 |
| GlpR | 48-67 | 6.283 |
| UxuR | 58-75 | 5.997 |
| NtrC | 172-188 | 5.979 |
| GalR | 94-109 | 5.902 |
| GalS | 94-109 | 5.902 |
| LacI | 285-305 | 5.900 |
| ArgP | 335-347 | 5.739 |
| NarL | 240-246 | 5.634 |
| CytR | 212-251 | 5.613 |
| Ada | 53-80 | 5.443 |
| Fis | 73-93 | 5.276 |
| UlaR | 277-296 | 5.272 |
| AgaR | 349-372 | 5.262 |
| PhoP | 109-125 | 5.207 |