| TF name | Position | PWM scan score |
| ArcA | 27-87 | 12.386 |
| OmpR | 69-88 | 11.720 |
| PurR | 102-117 | 10.037 |
| TorR | 368-377 | 9.594 |
| FNR | 290-311 | 9.306 |
| MelR | 204-221 | 9.233 |
| RcsB | 89-102 | 9.219 |
| NorR | 24-40 | 9.094 |
| RhaS | 31-47 | 8.327 |
| H-NS | 85-99 | 8.326 |
| CueR | 6-24 | 8.307 |
| Fis | 55-75 | 8.176 |
| DeoR | 67-82 | 7.980 |
| PhoP | 45-61 | 7.810 |
| PhoB | 62-81 | 7.794 |
| NarL | 212-218 | 7.577 |
| MarA | 64-84 | 7.488 |
| SoxS | 57-74 | 7.425 |
| GcvA | 62-90 | 7.333 |
| MetJ | 342-349 | 7.198 |
| GlpR | 373-392 | 7.164 |
| Rob | 268-288 | 7.086 |
| IHF | 69-81 | 6.967 |
| DnaA | 298-306 | 6.913 |
| GntR | 369-388 | 6.759 |
| AraC | 89-106 | 6.702 |
| CRP | 195-216 | 6.246 |
| GadE | 277-296 | 6.160 |
| NarP | 294-300 | 6.076 |
| Lrp | 67-78 | 5.948 |
| ArgR | 65-80 | 5.913 |
| UlaR | 245-264 | 5.692 |
| Nac | 54-68 | 5.170 |
| AgaR | 29-52 | 5.007 |