| TF name | Position | PWM scan score |
| ArcA | 244-304 | 12.386 |
| OmpR | 286-305 | 11.720 |
| AgaR | 108-131 | 11.037 |
| MelR | 125-142 | 10.330 |
| FNR | 111-132 | 10.266 |
| PurR | 319-334 | 10.037 |
| MetR | 96-119 | 9.836 |
| UlaR | 123-142 | 9.742 |
| CytR | 113-152 | 9.699 |
| RcsB | 306-319 | 9.219 |
| TorR | 352-361 | 9.206 |
| NorR | 241-257 | 9.094 |
| GlpR | 72-91 | 9.094 |
| IHF | 128-140 | 8.804 |
| Lrp | 85-96 | 8.764 |
| MarA | 73-93 | 8.712 |
| SoxS | 75-92 | 8.510 |
| RhaS | 248-264 | 8.327 |
| H-NS | 302-316 | 8.326 |
| CueR | 223-241 | 8.307 |
| Fis | 272-292 | 8.176 |
| Ada | 89-116 | 8.137 |
| DeoR | 284-299 | 7.980 |
| PhoP | 262-278 | 7.810 |
| PhoB | 279-298 | 7.794 |
| Mlc | 6-28 | 7.610 |
| GcvA | 279-307 | 7.333 |
| CRP | 108-129 | 7.244 |
| PspF | 170-186 | 7.182 |
| Fur | 82-96 | 7.136 |
| MetJ | 206-213 | 6.925 |
| AraC | 168-185 | 6.861 |
| NarL | 243-249 | 6.494 |
| Rob | 267-287 | 6.446 |
| ArgR | 282-297 | 5.913 |
| Nac | 271-285 | 5.170 |
| UxuR | 50-67 | 5.055 |