| TF name | Position | PWM scan score |
| GlpR | 55-74 | 13.691 |
| NagC | 167-189 | 12.942 |
| PurR | 77-92 | 12.781 |
| GadE | 361-380 | 11.727 |
| PhoB | 313-332 | 11.267 |
| IHF | 75-87 | 10.962 |
| RcsB | 98-111 | 10.905 |
| MetR | 89-112 | 10.582 |
| ArcA | 102-162 | 10.581 |
| PhoP | 383-399 | 10.473 |
| H-NS | 52-66 | 10.415 |
| TyrR | 156-177 | 9.590 |
| MalT | 205-214 | 9.491 |
| UlaR | 94-113 | 9.267 |
| MarA | 334-354 | 9.211 |
| OmpR | 40-59 | 8.946 |
| Ada | 145-172 | 8.943 |
| MelR | 246-263 | 8.729 |
| NarP | 308-314 | 8.118 |
| UxuR | 129-146 | 7.946 |
| CRP | 55-76 | 7.832 |
| Lrp | 161-172 | 7.784 |
| Rob | 368-388 | 7.668 |
| FadR | 51-67 | 7.560 |
| FNR | 66-87 | 7.421 |
| Mlc | 163-185 | 6.679 |
| DnaA | 306-314 | 6.605 |
| AgaR | 128-151 | 6.482 |
| Fis | 178-198 | 6.248 |
| NtrC | 37-53 | 6.221 |
| Nac | 54-68 | 6.053 |
| GcvA | 370-398 | 5.975 |
| NorR | 220-236 | 5.722 |
| ArgP | 220-232 | 5.646 |
| SoxS | 68-85 | 5.496 |
| ModE | 189-215 | 5.184 |
| ArgR | 380-395 | 5.082 |
| TorR | 303-312 | 5.065 |