| TF name | Position | PWM scan score |
| NorR | 296-312 | 13.125 |
| MetR | 340-363 | 11.704 |
| OmpR | 245-264 | 11.179 |
| FNR | 128-149 | 8.933 |
| DnaA | 268-276 | 8.868 |
| CueR | 285-303 | 8.827 |
| IHF | 114-126 | 8.584 |
| MalT | 8-17 | 8.150 |
| MetJ | 185-192 | 7.893 |
| Lrp | 86-97 | 7.496 |
| GlpR | 91-110 | 7.408 |
| H-NS | 89-103 | 7.171 |
| NarL | 240-246 | 7.107 |
| GntR | 261-280 | 7.015 |
| RcsB | 138-151 | 6.806 |
| Rob | 261-281 | 6.798 |
| MelR | 141-158 | 6.782 |
| MarA | 219-239 | 6.638 |
| ArgP | 58-70 | 6.589 |
| Fis | 51-71 | 6.389 |
| PhoP | 254-270 | 6.074 |
| ArcA | 218-278 | 5.938 |
| NagC | 337-359 | 5.892 |
| LacI | 144-164 | 5.888 |
| Fur | 19-33 | 5.862 |
| Nac | 133-147 | 5.698 |
| ModE | 145-171 | 5.585 |
| PhoB | 144-163 | 5.494 |
| Mlc | 335-357 | 5.283 |
| CysB | 183-224 | 5.227 |
| NarP | 203-209 | 5.094 |