| TF name | Position | PWM scan score |
| TorR | 375-384 | 11.049 |
| CpxR | 149-163 | 9.594 |
| NarP | 287-293 | 8.982 |
| LacI | 3-23 | 8.163 |
| MalT | 254-263 | 8.027 |
| GadE | 206-225 | 7.605 |
| DnaA | 365-373 | 7.375 |
| Nac | 378-392 | 7.042 |
| MelR | 86-103 | 6.991 |
| NorR | 216-232 | 6.764 |
| TyrR | 213-234 | 6.498 |
| PhoB | 137-156 | 6.486 |
| Ada | 295-322 | 6.295 |
| MetJ | 296-303 | 6.013 |
| FNR | 376-397 | 5.970 |
| IHF | 355-367 | 5.888 |
| XylR | 307-324 | 5.719 |
| FadR | 314-330 | 5.713 |
| Lrp | 15-26 | 5.663 |
| ArgR | 211-226 | 5.516 |
| ModE | 296-322 | 5.349 |
| Fis | 86-106 | 5.266 |
| CysB | 356-397 | 5.209 |
| NarL | 384-390 | 5.205 |
| SoxS | 381-398 | 5.176 |