| TF name | Position | PWM scan score |
| CytR | 39-78 | 15.394 |
| ArcA | 11-71 | 12.763 |
| ArgR | 40-55 | 12.013 |
| FNR | 372-393 | 11.487 |
| CRP | 34-55 | 11.230 |
| SoxS | 80-97 | 10.966 |
| XylR | 371-388 | 10.857 |
| Fis | 206-226 | 10.413 |
| PspF | 34-50 | 9.102 |
| NarP | 57-63 | 8.982 |
| LacI | 167-187 | 8.817 |
| RhaS | 119-135 | 8.775 |
| CysB | 7-48 | 8.761 |
| MetJ | 391-398 | 8.612 |
| NarL | 135-141 | 8.169 |
| ModE | 74-100 | 7.993 |
| Nac | 33-47 | 7.919 |
| Lrp | 40-51 | 7.911 |
| UlaR | 65-84 | 7.892 |
| AraC | 299-316 | 7.776 |
| MarA | 345-365 | 7.691 |
| OmpR | 374-393 | 7.638 |
| IHF | 368-380 | 7.247 |
| H-NS | 377-391 | 7.162 |
| MalT | 258-267 | 7.042 |
| Ada | 317-344 | 6.994 |
| GadE | 376-395 | 6.940 |
| DnaA | 380-388 | 6.913 |
| PhoB | 361-380 | 6.747 |
| ArgP | 380-392 | 6.589 |
| NagC | 11-33 | 6.554 |
| RcsB | 41-54 | 6.484 |
| PhoP | 379-395 | 6.285 |
| Rob | 170-190 | 5.732 |
| DeoR | 311-326 | 5.672 |
| NorR | 265-281 | 5.631 |
| TyrR | 5-26 | 5.596 |
| TorR | 337-346 | 5.542 |
| AgaR | 24-47 | 5.345 |
| MetR | 60-83 | 5.071 |
| GlpR | 377-396 | 5.037 |