| TF name | Position | PWM scan score |
| ArgR | 232-247 | 13.741 |
| Nac | 178-192 | 13.135 |
| NorR | 354-370 | 12.671 |
| FhlA | 304-343 | 11.486 |
| Rob | 352-372 | 10.569 |
| CysB | 350-391 | 10.443 |
| H-NS | 234-248 | 10.016 |
| FruR | 285-302 | 9.722 |
| RcsB | 174-187 | 9.510 |
| FNR | 246-267 | 8.578 |
| IHF | 255-267 | 8.432 |
| MetR | 232-255 | 8.358 |
| NarL | 211-217 | 8.142 |
| OmpR | 372-391 | 7.803 |
| TorR | 367-376 | 7.620 |
| IdnR | 216-231 | 7.607 |
| ArcA | 330-390 | 7.604 |
| NagC | 339-361 | 7.459 |
| MarA | 317-337 | 7.295 |
| DnaA | 294-302 | 6.990 |
| AraC | 378-395 | 6.955 |
| Lrp | 336-347 | 6.786 |
| Ada | 216-243 | 6.710 |
| ArgP | 320-332 | 6.520 |
| GadE | 312-331 | 5.963 |
| GntR | 90-109 | 5.899 |
| AgaR | 320-343 | 5.846 |
| GalR | 211-226 | 5.816 |
| GalS | 211-226 | 5.816 |
| DeoR | 312-327 | 5.717 |
| Mlc | 333-355 | 5.709 |
| CRP | 228-249 | 5.687 |
| SoxS | 311-328 | 5.630 |
| CpxR | 255-269 | 5.601 |
| TyrR | 243-264 | 5.576 |
| MelR | 298-315 | 5.534 |
| MalT | 308-317 | 5.517 |
| NarP | 365-371 | 5.507 |
| Fis | 314-334 | 5.198 |
| XylR | 170-187 | 5.181 |
| PhoB | 66-85 | 5.100 |