| TF name | Position | PWM scan score |
| GadE | 75-94 | 13.468 |
| NorR | 9-25 | 12.671 |
| ArgP | 91-103 | 11.010 |
| Rob | 7-27 | 10.569 |
| CysB | 5-46 | 10.443 |
| DeoR | 162-177 | 9.880 |
| OmpR | 342-361 | 9.290 |
| MarA | 168-188 | 8.500 |
| SoxS | 170-187 | 8.235 |
| Nac | 71-85 | 8.192 |
| RcsB | 4-17 | 7.990 |
| GalR | 290-305 | 7.823 |
| GalS | 290-305 | 7.823 |
| TorR | 22-31 | 7.620 |
| Fur | 79-93 | 7.611 |
| NagC | 343-365 | 7.552 |
| H-NS | 168-182 | 7.477 |
| Mlc | 341-363 | 7.374 |
| FadR | 220-236 | 7.170 |
| AraC | 33-50 | 6.955 |
| IHF | 267-279 | 6.562 |
| RhaS | 298-314 | 6.367 |
| Fis | 159-179 | 6.340 |
| NarL | 132-138 | 6.294 |
| Lrp | 87-98 | 6.255 |
| ArcA | 36-96 | 6.197 |
| MetR | 74-97 | 6.181 |
| GntR | 240-259 | 6.152 |
| AgaR | 66-89 | 6.136 |
| UlaR | 59-78 | 5.984 |
| LexA | 318-337 | 5.533 |
| NarP | 20-26 | 5.507 |
| CRP | 342-363 | 5.294 |
| DnaA | 25-33 | 5.107 |