| TF name | Position | PWM scan score |
| OmpR | 372-391 | 10.457 |
| CRP | 77-98 | 9.491 |
| FhlA | 70-109 | 9.169 |
| FadR | 2-18 | 8.848 |
| GadE | 373-392 | 8.809 |
| TorR | 83-92 | 8.515 |
| SoxS | 72-89 | 8.468 |
| ArcA | 339-399 | 8.241 |
| Fur | 78-92 | 8.115 |
| MalT | 61-70 | 7.873 |
| FNR | 370-391 | 7.802 |
| ArgP | 192-204 | 7.787 |
| Ada | 361-388 | 7.562 |
| IHF | 284-296 | 7.358 |
| NarP | 364-370 | 7.352 |
| NarL | 158-164 | 7.309 |
| TyrR | 367-388 | 7.103 |
| H-NS | 377-391 | 7.009 |
| AraC | 344-361 | 7.003 |
| XylR | 267-284 | 6.954 |
| PhoB | 351-370 | 6.746 |
| CueR | 106-124 | 6.561 |
| Lrp | 149-160 | 6.349 |
| GlpR | 210-229 | 6.167 |
| MetJ | 64-71 | 6.138 |
| UlaR | 142-161 | 6.064 |
| ModE | 77-103 | 5.991 |
| CytR | 353-392 | 5.846 |
| NtrC | 265-281 | 5.530 |
| AgaR | 269-292 | 5.503 |
| PhoP | 195-211 | 5.197 |
| NorR | 270-286 | 5.189 |