| TF name | Position | PWM scan score |
| PhoP | 350-366 | 9.839 |
| NarP | 278-284 | 8.982 |
| LacI | 332-352 | 8.229 |
| RcsB | 209-222 | 8.137 |
| NtrC | 233-249 | 8.050 |
| Lrp | 211-222 | 7.787 |
| PhoB | 261-280 | 7.764 |
| GalR | 50-65 | 7.665 |
| GalS | 50-65 | 7.665 |
| NorR | 284-300 | 7.583 |
| TorR | 211-220 | 7.387 |
| Fis | 271-291 | 6.949 |
| Rob | 64-84 | 6.736 |
| FadR | 217-233 | 6.605 |
| MetJ | 267-274 | 6.074 |
| MarA | 232-252 | 6.020 |
| XylR | 204-221 | 5.623 |
| FNR | 208-229 | 5.607 |
| MalT | 219-228 | 5.440 |
| Nac | 377-391 | 5.258 |
| RhaS | 379-395 | 5.249 |
| TyrR | 202-223 | 5.169 |