| TF name | Position | PWM scan score |
| GadE | 354-373 | 10.982 |
| Fis | 201-221 | 10.045 |
| GntR | 84-103 | 9.632 |
| MarA | 56-76 | 9.258 |
| Nac | 70-84 | 9.130 |
| IHF | 119-131 | 9.080 |
| NarL | 387-393 | 8.619 |
| PurR | 262-277 | 8.574 |
| RcsB | 34-47 | 8.040 |
| NarP | 346-352 | 7.426 |
| H-NS | 89-103 | 7.298 |
| Rob | 287-307 | 7.181 |
| MetJ | 222-229 | 7.171 |
| DnaA | 247-255 | 7.095 |
| CpxR | 345-359 | 7.014 |
| CueR | 160-178 | 6.598 |
| Lrp | 242-253 | 6.537 |
| FNR | 131-152 | 6.166 |
| GalR | 66-81 | 6.073 |
| GalS | 66-81 | 6.073 |
| XylR | 202-219 | 5.763 |
| Fur | 65-79 | 5.644 |
| FhlA | 36-75 | 5.466 |
| IdnR | 273-288 | 5.348 |
| Ada | 18-45 | 5.310 |
| ArgR | 380-395 | 5.273 |
| FadR | 119-135 | 5.270 |
| TorR | 352-361 | 5.243 |
| PspF | 382-398 | 5.028 |