| TF name | Position | PWM scan score |
| Mlc | 174-196 | 15.017 |
| ArcA | 111-171 | 13.082 |
| H-NS | 136-150 | 11.813 |
| GadE | 272-291 | 11.695 |
| NagC | 116-138 | 11.041 |
| SoxS | 278-295 | 11.036 |
| Nac | 374-388 | 11.002 |
| ArgR | 188-203 | 10.041 |
| FNR | 276-297 | 10.034 |
| RcsB | 133-146 | 9.945 |
| PurR | 232-247 | 9.925 |
| AraC | 364-381 | 9.884 |
| OmpR | 356-375 | 9.537 |
| FruR | 336-353 | 9.506 |
| XylR | 353-370 | 9.381 |
| PhoB | 285-304 | 9.311 |
| Lrp | 279-290 | 9.224 |
| Ada | 369-396 | 9.159 |
| IHF | 363-375 | 9.086 |
| DeoR | 177-192 | 9.078 |
| TyrR | 128-149 | 8.960 |
| NarP | 227-233 | 8.877 |
| ArgP | 137-149 | 8.813 |
| DnaA | 140-148 | 8.717 |
| UlaR | 303-322 | 8.348 |
| AgaR | 288-311 | 8.251 |
| PspF | 348-364 | 8.244 |
| PhoP | 256-272 | 7.878 |
| CpxR | 177-191 | 7.730 |
| CysB | 118-159 | 7.702 |
| Rob | 148-168 | 7.434 |
| CRP | 369-390 | 7.331 |
| Fis | 258-278 | 7.235 |
| MarA | 369-389 | 6.716 |
| GalR | 232-247 | 6.481 |
| GalS | 232-247 | 6.481 |
| NorR | 253-269 | 6.380 |
| GntR | 369-388 | 6.156 |
| GcvA | 307-335 | 5.962 |
| GlpR | 314-333 | 5.872 |
| MetR | 374-397 | 5.866 |
| Fur | 231-245 | 5.764 |
| FadR | 157-173 | 5.619 |
| IdnR | 377-392 | 5.522 |
| MelR | 187-204 | 5.432 |
| NarL | 198-204 | 5.408 |
| LacI | 334-354 | 5.405 |