| TF name | Position | PWM scan score |
| MarA | 91-111 | 14.356 |
| SoxS | 115-132 | 12.877 |
| MelR | 12-29 | 11.830 |
| DnaA | 55-63 | 10.953 |
| H-NS | 198-212 | 10.858 |
| Nac | 120-134 | 10.781 |
| FNR | 122-143 | 10.717 |
| IHF | 102-114 | 10.567 |
| RhaS | 374-390 | 10.515 |
| Fur | 122-136 | 9.974 |
| UxuR | 5-22 | 9.823 |
| TyrR | 43-64 | 9.355 |
| CRP | 173-194 | 9.194 |
| MetR | 3-26 | 9.188 |
| LacI | 360-380 | 9.119 |
| ArgP | 123-135 | 8.973 |
| DeoR | 206-221 | 8.824 |
| OmpR | 200-219 | 8.187 |
| Lrp | 125-136 | 7.907 |
| AraC | 305-322 | 7.343 |
| Fis | 156-176 | 7.056 |
| TorR | 261-270 | 7.015 |
| NorR | 261-277 | 6.653 |
| CpxR | 55-69 | 6.517 |
| ArcA | 187-247 | 6.313 |
| GadE | 2-21 | 6.075 |
| GlpR | 266-285 | 5.877 |
| RcsB | 322-335 | 5.855 |
| Rob | 236-256 | 5.704 |
| NarL | 123-129 | 5.634 |
| ArgR | 84-99 | 5.617 |
| MetJ | 252-259 | 5.539 |
| FruR | 267-284 | 5.515 |
| Ada | 2-29 | 5.489 |
| AgaR | 259-282 | 5.332 |
| XylR | 285-302 | 5.112 |