| TF name | Position | PWM scan score |
| NagC | 106-128 | 15.446 |
| OmpR | 193-212 | 13.701 |
| MelR | 332-349 | 13.149 |
| Nac | 262-276 | 11.446 |
| ArgR | 202-217 | 10.865 |
| H-NS | 196-210 | 10.555 |
| MetJ | 11-18 | 10.318 |
| IHF | 303-315 | 10.161 |
| GcvA | 339-367 | 10.151 |
| TyrR | 325-346 | 10.077 |
| PspF | 242-258 | 9.221 |
| CpxR | 272-286 | 9.166 |
| Mlc | 295-317 | 9.158 |
| UxuR | 121-138 | 8.935 |
| ArgP | 29-41 | 8.904 |
| DnaA | 9-17 | 8.811 |
| FNR | 265-286 | 8.419 |
| RcsB | 275-288 | 8.266 |
| Fis | 236-256 | 8.216 |
| CRP | 277-298 | 8.068 |
| Fur | 297-311 | 7.834 |
| DeoR | 181-196 | 7.823 |
| IdnR | 47-62 | 7.793 |
| AraC | 187-204 | 7.681 |
| MarA | 113-133 | 7.589 |
| Lrp | 30-41 | 7.503 |
| SoxS | 180-197 | 7.164 |
| ArcA | 2-62 | 6.982 |
| TorR | 302-311 | 6.664 |
| CysB | 346-387 | 6.617 |
| NarL | 368-374 | 6.612 |
| AgaR | 23-46 | 6.486 |
| PurR | 227-242 | 6.376 |
| GadE | 344-363 | 6.329 |
| TrpR | 163-180 | 6.230 |
| GntR | 371-390 | 6.224 |
| NarP | 233-239 | 6.076 |
| PhoB | 234-253 | 5.969 |
| UlaR | 250-269 | 5.439 |
| FadR | 253-269 | 5.168 |
| LacI | 173-193 | 5.102 |