| TF name | Position | PWM scan score |
| ArcA | 307-367 | 23.071 |
| GcvA | 173-201 | 15.713 |
| CysB | 346-387 | 15.403 |
| AgaR | 343-366 | 14.161 |
| ArgR | 316-331 | 14.101 |
| NagC | 74-96 | 13.693 |
| CytR | 343-382 | 12.859 |
| XylR | 160-177 | 12.296 |
| UlaR | 359-378 | 11.731 |
| Rob | 29-49 | 11.109 |
| Mlc | 326-348 | 10.604 |
| AraC | 81-98 | 10.056 |
| GlpR | 129-148 | 9.757 |
| H-NS | 284-298 | 9.383 |
| PurR | 341-356 | 9.182 |
| IHF | 363-375 | 9.178 |
| OmpR | 176-195 | 9.074 |
| NorR | 328-344 | 9.015 |
| Fis | 78-98 | 8.769 |
| FNR | 374-395 | 8.576 |
| FadR | 295-311 | 8.132 |
| CpxR | 321-335 | 8.033 |
| TorR | 355-364 | 8.008 |
| PspF | 333-349 | 7.856 |
| MetJ | 384-391 | 7.714 |
| SoxS | 354-371 | 7.672 |
| MalT | 48-57 | 7.587 |
| ArgP | 359-371 | 7.519 |
| Nac | 153-167 | 7.334 |
| GalS | 341-356 | 6.926 |
| GalR | 341-356 | 6.926 |
| Lrp | 377-388 | 6.893 |
| PhoB | 153-172 | 6.833 |
| Fur | 339-353 | 6.739 |
| MarA | 269-289 | 6.643 |
| ModE | 211-237 | 6.551 |
| TyrR | 364-385 | 6.393 |
| GadE | 374-393 | 6.356 |
| DnaA | 182-190 | 6.340 |
| DeoR | 25-40 | 6.306 |
| PhoP | 25-41 | 6.194 |
| NarL | 245-251 | 6.169 |
| UxuR | 334-351 | 6.117 |
| RhaS | 269-285 | 5.949 |
| NarP | 164-170 | 5.765 |
| CRP | 146-167 | 5.718 |
| OxyR | 328-372 | 5.427 |
| Ada | 55-82 | 5.302 |