| TF name | Position | PWM scan score |
| MetJ | 123-130 | 10.091 |
| RhaS | 376-392 | 10.087 |
| DnaA | 171-179 | 9.566 |
| MalT | 87-96 | 9.542 |
| GntR | 304-323 | 9.047 |
| TyrR | 70-91 | 8.927 |
| NarL | 371-377 | 8.782 |
| XylR | 245-262 | 8.737 |
| MarA | 288-308 | 8.524 |
| OmpR | 275-294 | 8.192 |
| PurR | 318-333 | 7.601 |
| IHF | 318-330 | 7.355 |
| AraC | 289-306 | 7.345 |
| TorR | 191-200 | 7.199 |
| H-NS | 278-292 | 7.137 |
| FNR | 309-330 | 7.104 |
| GadE | 284-303 | 6.999 |
| DeoR | 282-297 | 6.568 |
| FruR | 184-201 | 6.517 |
| SoxS | 200-217 | 6.485 |
| NarP | 37-43 | 6.421 |
| Nac | 113-127 | 6.368 |
| CaiF | 291-335 | 5.501 |
| UlaR | 78-97 | 5.382 |
| CRP | 375-396 | 5.324 |
| Lrp | 166-177 | 5.156 |
| LacI | 109-129 | 5.098 |
| ModE | 241-267 | 5.086 |
| NtrC | 102-118 | 5.060 |